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- The medicine database is now much bigger and has a real update path.

Browse Source 
Added:
Live source updater for RxNorm, DailyMed, and openFDA.
Admin dashboard panel to refresh medicine sources.
CLI updater for periodic jobs: 
[scripts/update_medicine_catalog.php](/Users/tyemeclifford/Documents/GH/workout/scripts/update_medicine_catalog.php)
Update history table: medication_source_updates.
Curl fallback for external fetches when PHP stream DNS fails.
README instructions for periodic updates.
I also ran the imports:
Current medication catalog count: 6,002.
Latest source imports:RxNorm: 3,875 inserted, 1,125 updated.
openFDA: 912 inserted, 88 updated.
DailyMed: 95 inserted.

Periodic update command:
/Users/tyemeclifford/frankenphp php-cli 
scripts/update_medicine_catalog.php 5000 all
This commit is contained in:
Ty Clifford
2026-06-30 15:29:57 -04:00
parent 17ebaf21a3
commit 96de47be43
10 changed files with 594 additions and 14 deletions
Download Patch File Download Diff File Expand all files Collapse all files
public/medical.php
+35 -8
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@@ -6,19 +6,40 @@ $pdo = app_db();
$pageTitle = 'Medical Terminology Database | Neon Medical Tracker';
$activePage = 'terminology';
$terms = db_all($pdo, 'SELECT * FROM medical_terms ORDER BY category, term');
$conditions = db_all($pdo, 'SELECT * FROM medical_conditions ORDER BY category, name');
$medicines = db_all($pdo, 'SELECT * FROM medication_catalog ORDER BY generic_name');
$studies = db_all($pdo, 'SELECT * FROM research_studies ORDER BY category, related_medicine, title');
$searchQuery = trim((string) ($_GET['q'] ?? ''));
$library = library_search_payload(['q' => $searchQuery, 'limit' => 500]);
$terms = $library['medicalTerms'];
$conditions = $library['medicalConditions'];
$medicines = $library['medicationCatalog'];
$studies = $library['researchStudies'];
$totalMedicines = (int) db_value($pdo, 'SELECT COUNT(*) FROM medication_catalog');
require __DIR__ . '/partials/site-header.php';
?>
<main>
<section class="admin-public-shell">
<div class="site-section-heading">
<p class="site-eyebrow">Medical terminology database</p>
<h1>Terms, conditions, medicines, and NIH/NLM study links.</h1>
<p>Entries are concise app-authored summaries with links to NIH/NLM systems such as MedlinePlus, RxNorm, PubMed, and ClinicalTrials.gov. This is a tracking/reference aid, not medical advice.</p>
<p class="site-eyebrow">Searchable medical library</p>
<h1>Search terms, conditions, medicines, chemical names, and brands.</h1>
<p>Entries are concise app-authored summaries with links to NIH/NLM systems such as MedlinePlus, RxNorm, DailyMed, PubChem, PubMed, and ClinicalTrials.gov. This is a tracking/reference aid, not medical advice.</p>
</div>
<form class="library-search" method="get" action="/medical.php">
<label>
<span>Search medical library</span>
<input name="q" value="<?= htmlspecialchars($searchQuery, ENT_QUOTES) ?>" placeholder="Try Lipitor, atorvastatin, blood pressure, CBC, metformin">
</label>
<button class="site-primary" type="submit">Search</button>
<?php if ($searchQuery !== ''): ?>
<a class="site-secondary" href="/medical.php">Clear</a>
<?php endif; ?>
</form>
<div class="library-stats" aria-label="Search result counts">
<article><strong><?= count($medicines) ?></strong><span><?= $searchQuery === '' ? 'medicines shown of ' . number_format($totalMedicines) : 'medicine results' ?></span></article>
<article><strong><?= count($terms) ?></strong><span>terms</span></article>
<article><strong><?= count($conditions) ?></strong><span>conditions</span></article>
<article><strong><?= count($studies) ?></strong><span>study links</span></article>
</div>
<div class="detail-grid">
@@ -57,17 +78,23 @@ require __DIR__ . '/partials/site-header.php';
<section class="admin-public-shell">
<div class="site-section-heading">
<p class="site-eyebrow">Medication catalog</p>
<h2>Medicines with RxNorm, PubMed, and ClinicalTrials.gov links</h2>
<h2>Medicines with chemical, brand, RxNorm, DailyMed, and PubChem links</h2>
</div>
<div class="detail-grid">
<?php foreach ($medicines as $medicine): ?>
<article>
<h2><?= htmlspecialchars(ucfirst($medicine['generic_name']), ENT_QUOTES) ?></h2>
<p><strong><?= htmlspecialchars($medicine['class_name'], ENT_QUOTES) ?></strong></p>
<p><strong>Active ingredient:</strong> <?= htmlspecialchars($medicine['active_ingredient'] ?: $medicine['generic_name'], ENT_QUOTES) ?></p>
<p><strong>Chemical name:</strong> <?= htmlspecialchars($medicine['chemical_name'] ?: $medicine['active_ingredient'] ?: $medicine['generic_name'], ENT_QUOTES) ?></p>
<p><strong>Common brands:</strong> <?= htmlspecialchars($medicine['brand_names'] ?: 'Brand names vary by market', ENT_QUOTES) ?></p>
<p><strong>Generic/alternate names:</strong> <?= htmlspecialchars($medicine['generic_brands'] ?: $medicine['generic_name'], ENT_QUOTES) ?></p>
<p><?= htmlspecialchars($medicine['common_use'], ENT_QUOTES) ?></p>
<p><?= htmlspecialchars($medicine['tracking_note'], ENT_QUOTES) ?></p>
<div class="source-links">
<a href="<?= htmlspecialchars($medicine['rxnorm_url'], ENT_QUOTES) ?>">RxNorm</a>
<a href="<?= htmlspecialchars($medicine['pubchem_url'], ENT_QUOTES) ?>">PubChem</a>
<a href="<?= htmlspecialchars($medicine['dailymed_url'], ENT_QUOTES) ?>">DailyMed</a>
<a href="<?= htmlspecialchars($medicine['medlineplus_url'], ENT_QUOTES) ?>">MedlinePlus</a>
<a href="<?= htmlspecialchars($medicine['pubmed_url'], ENT_QUOTES) ?>">PubMed</a>
<a href="<?= htmlspecialchars($medicine['clinicaltrials_url'], ENT_QUOTES) ?>">Studies</a>