- The medicine database is now much bigger and has a real update path.

Added: Live source updater for RxNorm, DailyMed, and openFDA. Admin dashboard panel to refresh medicine sources. CLI updater for periodic jobs: [scripts/update_medicine_catalog.php](/Users/tyemeclifford/Documents/GH/workout/scripts/update_medicine_catalog.php) Update history table: medication_source_updates. Curl fallback for external fetches when PHP stream DNS fails. README instructions for periodic updates. I also ran the imports: Current medication catalog count: 6,002. Latest source imports:RxNorm: 3,875 inserted, 1,125 updated. openFDA: 912 inserted, 88 updated. DailyMed: 95 inserted. Periodic update command: /Users/tyemeclifford/frankenphp php-cli scripts/update_medicine_catalog.php 5000 all
2026-06-30 15:29:57 -04:00
parent 17ebaf21a3
commit 96de47be43
10 changed files with 594 additions and 14 deletions
@@ -31,6 +31,21 @@ require __DIR__ . '/partials/site-header.php';

        <section class="admin-panel site-admin-panel" id="adminPanel" hidden>
            <div class="admin-stats" id="adminStats"></div>
+
+            <section class="admin-source-panel">
+                <div class="site-section-heading">
+                    <p class="site-eyebrow">Medicine source updater</p>
+                    <h2>Refresh the medication catalog from public sources.</h2>
+                    <p>Pull medicine concepts from RxNorm, DailyMed, and openFDA. Use a smaller limit for quick checks or a larger limit for periodic maintenance.</p>
+                </div>
+                <form class="admin-source-form" id="medicineSourceRefreshForm">
+                    <label class="site-field"><span>Source</span><select name="source"><option value="all">All sources</option><option>RxNorm</option><option>DailyMed</option><option>openFDA</option></select></label>
+                    <label class="site-field"><span>Max rows per source</span><input name="limit" type="number" min="25" max="5000" step="25" value="1000"></label>
+                    <button class="site-primary" type="submit">Refresh medicines</button>
+                </form>
+                <div class="source-refresh-result" id="medicineSourceRefreshResult" role="status" aria-live="polite"></div>
+            </section>
+
            <div class="admin-layout">
                <div class="admin-user-list" id="adminUserList"></div>
                <form class="admin-editor" id="adminUserForm">
@@ -45,6 +45,7 @@ try {
        'create_allergy_record' => 'create_allergy_record',
        'create_appointment' => 'create_appointment',
        'create_immunization_record' => 'create_immunization_record',
+        'refresh_medication_sources' => 'refresh_medication_sources',
    ];

    if (!isset($routes[$action])) {
@@ -186,6 +186,22 @@ function adminFormPayload(form) {
    return payload;
 }

+function renderRefreshResult(result) {
+    const target = admin$("#medicineSourceRefreshResult");
+    if (!target) return;
+    const rows = (result.sources || []).map((source) => `
+        <article>
+            <strong>${adminEscape(source.source)}: ${adminEscape(source.status)}</strong>
+            <span>${adminNumber(source.inserted)} inserted / ${adminNumber(source.updated)} updated</span>
+            <small>${adminEscape(source.message || "")}</small>
+        </article>
+    `).join("");
+    target.innerHTML = `
+        <p>${adminNumber(result.catalog_count)} medicines in catalog after refresh.</p>
+        <div class="source-refresh-list">${rows}</div>
+    `;
+}
+
 document.addEventListener("DOMContentLoaded", async () => {
    admin$("#adminProfileSelect").addEventListener("change", async (event) => {
        adminState.userId = event.target.value;
@@ -248,6 +264,27 @@ document.addEventListener("DOMContentLoaded", async () => {
        }
    });

+    const refreshForm = admin$("#medicineSourceRefreshForm");
+    if (refreshForm) {
+        refreshForm.addEventListener("submit", async (event) => {
+            event.preventDefault();
+            const payload = adminFormPayload(refreshForm);
+            const button = refreshForm.querySelector("button[type='submit']");
+            if (button) button.disabled = true;
+            admin$("#medicineSourceRefreshResult").textContent = "Refreshing medicine sources...";
+            try {
+                const result = await adminApi("refresh_medication_sources", payload);
+                renderRefreshResult(result);
+                adminToast("Medicine sources refreshed");
+            } catch (error) {
+                admin$("#medicineSourceRefreshResult").textContent = error.message;
+                adminToast(error.message);
+            } finally {
+                if (button) button.disabled = false;
+            }
+        });
+    }
+
    try {
        await loadAdminState();
    } catch (error) {
@@ -394,6 +394,64 @@ figcaption a {
    font-size: 0.78rem;
 }

+.library-search {
+    display: grid;
+    grid-template-columns: minmax(0, 1fr) auto auto;
+    gap: 10px;
+    align-items: end;
+    margin: 12px 0 18px;
+}
+
+.library-search label {
+    display: grid;
+    gap: 8px;
+    color: var(--muted);
+    font-size: 0.82rem;
+    font-weight: 700;
+}
+
+.library-search input {
+    width: 100%;
+    min-height: 48px;
+    border: 1px solid var(--line);
+    border-radius: 8px;
+    background: color-mix(in srgb, var(--panel-2), transparent 6%);
+    color: var(--text);
+    padding: 12px 14px;
+    font: inherit;
+}
+
+.library-search input:focus {
+    border-color: var(--accent);
+    box-shadow: 0 0 0 3px color-mix(in srgb, var(--accent), transparent 76%);
+    outline: none;
+}
+
+.library-stats {
+    display: grid;
+    grid-template-columns: repeat(4, minmax(0, 1fr));
+    gap: 10px;
+    margin-bottom: 18px;
+}
+
+.library-stats article {
+    border: 1px solid var(--line);
+    border-radius: var(--radius);
+    background: color-mix(in srgb, var(--panel-2), transparent 6%);
+    padding: 12px;
+}
+
+.library-stats strong {
+    display: block;
+    color: var(--accent);
+    font-size: 1.4rem;
+}
+
+.library-stats span {
+    color: var(--muted);
+    font-size: 0.82rem;
+}
+
 .site-split,
 .detail-hero,
 .signup-layout {
@@ -555,6 +613,47 @@ textarea:focus {
    font-size: 1.5rem;
 }

+.admin-source-panel {
+    border: 1px solid var(--line);
+    border-radius: var(--radius);
+    background: color-mix(in srgb, var(--panel-2), transparent 5%);
+    padding: 14px;
+    margin-bottom: 14px;
+}
+
+.admin-source-form {
+    display: grid;
+    grid-template-columns: minmax(0, 1fr) 190px auto;
+    gap: 10px;
+    align-items: end;
+}
+
+.source-refresh-result {
+    color: var(--muted);
+    font-size: 0.88rem;
+    margin-top: 12px;
+}
+
+.source-refresh-list {
+    display: grid;
+    gap: 8px;
+    margin-top: 10px;
+}
+
+.source-refresh-list article {
+    border: 1px solid var(--line);
+    border-radius: 8px;
+    background: color-mix(in srgb, var(--panel), transparent 10%);
+    display: grid;
+    gap: 4px;
+    padding: 10px;
+}
+
+.source-refresh-list span,
+.source-refresh-list small {
+    color: var(--muted);
+}
+
 .admin-layout {
    display: grid;
    grid-template-columns: minmax(0, 1.2fr) minmax(360px, 0.8fr);
@@ -718,7 +817,8 @@ textarea:focus {
    .site-split,
    .detail-hero,
    .signup-layout,
-    .admin-layout {
+    .admin-layout,
+    .admin-source-form {
        grid-template-columns: 1fr;
    }

@@ -753,11 +853,16 @@ textarea:focus {
    .feature-grid,
    .detail-grid,
    .admin-stats,
+    .library-stats,
    .signup-row,
    .form-grid.two {
        grid-template-columns: 1fr;
    }

+    .library-search {
+        grid-template-columns: 1fr;
+    }
+
    .admin-access-row,
    .admin-user-main,
    .panel-heading {
@@ -6,19 +6,40 @@ $pdo = app_db();

 $pageTitle = 'Medical Terminology Database | Neon Medical Tracker';
 $activePage = 'terminology';
-$terms = db_all($pdo, 'SELECT * FROM medical_terms ORDER BY category, term');
-$conditions = db_all($pdo, 'SELECT * FROM medical_conditions ORDER BY category, name');
-$medicines = db_all($pdo, 'SELECT * FROM medication_catalog ORDER BY generic_name');
-$studies = db_all($pdo, 'SELECT * FROM research_studies ORDER BY category, related_medicine, title');
+$searchQuery = trim((string) ($_GET['q'] ?? ''));
+$library = library_search_payload(['q' => $searchQuery, 'limit' => 500]);
+$terms = $library['medicalTerms'];
+$conditions = $library['medicalConditions'];
+$medicines = $library['medicationCatalog'];
+$studies = $library['researchStudies'];
+$totalMedicines = (int) db_value($pdo, 'SELECT COUNT(*) FROM medication_catalog');

 require __DIR__ . '/partials/site-header.php';
 ?>
 <main>
    <section class="admin-public-shell">
        <div class="site-section-heading">
-            <p class="site-eyebrow">Medical terminology database</p>
-            <h1>Terms, conditions, medicines, and NIH/NLM study links.</h1>
-            <p>Entries are concise app-authored summaries with links to NIH/NLM systems such as MedlinePlus, RxNorm, PubMed, and ClinicalTrials.gov. This is a tracking/reference aid, not medical advice.</p>
+            <p class="site-eyebrow">Searchable medical library</p>
+            <h1>Search terms, conditions, medicines, chemical names, and brands.</h1>
+            <p>Entries are concise app-authored summaries with links to NIH/NLM systems such as MedlinePlus, RxNorm, DailyMed, PubChem, PubMed, and ClinicalTrials.gov. This is a tracking/reference aid, not medical advice.</p>
+        </div>
+
+        <form class="library-search" method="get" action="/medical.php">
+            <label>
+                <span>Search medical library</span>
+                <input name="q" value="<?= htmlspecialchars($searchQuery, ENT_QUOTES) ?>" placeholder="Try Lipitor, atorvastatin, blood pressure, CBC, metformin">
+            </label>
+            <button class="site-primary" type="submit">Search</button>
+            <?php if ($searchQuery !== ''): ?>
+                <a class="site-secondary" href="/medical.php">Clear</a>
+            <?php endif; ?>
+        </form>
+
+        <div class="library-stats" aria-label="Search result counts">
+            <article><strong><?= count($medicines) ?></strong><span><?= $searchQuery === '' ? 'medicines shown of ' . number_format($totalMedicines) : 'medicine results' ?></span></article>
+            <article><strong><?= count($terms) ?></strong><span>terms</span></article>
+            <article><strong><?= count($conditions) ?></strong><span>conditions</span></article>
+            <article><strong><?= count($studies) ?></strong><span>study links</span></article>
        </div>

        <div class="detail-grid">
@@ -57,17 +78,23 @@ require __DIR__ . '/partials/site-header.php';
    <section class="admin-public-shell">
        <div class="site-section-heading">
            <p class="site-eyebrow">Medication catalog</p>
-            <h2>Medicines with RxNorm, PubMed, and ClinicalTrials.gov links</h2>
+            <h2>Medicines with chemical, brand, RxNorm, DailyMed, and PubChem links</h2>
        </div>
        <div class="detail-grid">
            <?php foreach ($medicines as $medicine): ?>
                <article>
                    <h2><?= htmlspecialchars(ucfirst($medicine['generic_name']), ENT_QUOTES) ?></h2>
                    <p><strong><?= htmlspecialchars($medicine['class_name'], ENT_QUOTES) ?></strong></p>
+                    <p><strong>Active ingredient:</strong> <?= htmlspecialchars($medicine['active_ingredient'] ?: $medicine['generic_name'], ENT_QUOTES) ?></p>
+                    <p><strong>Chemical name:</strong> <?= htmlspecialchars($medicine['chemical_name'] ?: $medicine['active_ingredient'] ?: $medicine['generic_name'], ENT_QUOTES) ?></p>
+                    <p><strong>Common brands:</strong> <?= htmlspecialchars($medicine['brand_names'] ?: 'Brand names vary by market', ENT_QUOTES) ?></p>
+                    <p><strong>Generic/alternate names:</strong> <?= htmlspecialchars($medicine['generic_brands'] ?: $medicine['generic_name'], ENT_QUOTES) ?></p>
                    <p><?= htmlspecialchars($medicine['common_use'], ENT_QUOTES) ?></p>
                    <p><?= htmlspecialchars($medicine['tracking_note'], ENT_QUOTES) ?></p>
                    <div class="source-links">
                        <a href="<?= htmlspecialchars($medicine['rxnorm_url'], ENT_QUOTES) ?>">RxNorm</a>
+                        <a href="<?= htmlspecialchars($medicine['pubchem_url'], ENT_QUOTES) ?>">PubChem</a>
+                        <a href="<?= htmlspecialchars($medicine['dailymed_url'], ENT_QUOTES) ?>">DailyMed</a>
                        <a href="<?= htmlspecialchars($medicine['medlineplus_url'], ENT_QUOTES) ?>">MedlinePlus</a>
                        <a href="<?= htmlspecialchars($medicine['pubmed_url'], ENT_QUOTES) ?>">PubMed</a>
                        <a href="<?= htmlspecialchars($medicine['clinicaltrials_url'], ENT_QUOTES) ?>">Studies</a>
@@ -6,7 +6,10 @@ $pdo = app_db();

 $pageTitle = 'Medicine Catalog | Neon Medical Tracker';
 $activePage = 'medicines';
-$medicines = db_all($pdo, 'SELECT * FROM medication_catalog ORDER BY generic_name');
+$searchQuery = trim((string) ($_GET['q'] ?? ''));
+$library = library_search_payload(['q' => $searchQuery, 'limit' => 500]);
+$medicines = $library['medicationCatalog'];
+$totalMedicines = (int) db_value($pdo, 'SELECT COUNT(*) FROM medication_catalog');
 $photo = 'https://upload.wikimedia.org/wikipedia/commons/thumb/4/4f/A_large_mixed_salad.jpg/1024px-A_large_mixed_salad.jpg';
 require __DIR__ . '/partials/site-header.php';
 ?>
@@ -21,21 +24,43 @@ require __DIR__ . '/partials/site-header.php';
        </figure>
        <div>
            <p class="site-eyebrow">Medicine catalog</p>
-            <h1>Track medicines with source links beside every catalog entry.</h1>
-            <p>The starter catalog includes common medicines and links each one to RxNorm, MedlinePlus, PubMed, and ClinicalTrials.gov searches.</p>
+            <h1>Search medicines by generic, chemical, brand, and alternate names.</h1>
+            <p>The catalog includes common medicines and links each one to RxNorm, DailyMed, PubChem, MedlinePlus, PubMed, and ClinicalTrials.gov searches.</p>
            <a class="site-primary" href="/tracker.php">Open medical tracker</a>
        </div>
    </section>

+    <section class="admin-public-shell">
+        <form class="library-search" method="get" action="/nutrition.php">
+            <label>
+                <span>Search medicine catalog</span>
+                <input name="q" value="<?= htmlspecialchars($searchQuery, ENT_QUOTES) ?>" placeholder="Try Zoloft, sertraline, insulin, acetaminophen, blood pressure">
+            </label>
+            <button class="site-primary" type="submit">Search</button>
+            <?php if ($searchQuery !== ''): ?>
+                <a class="site-secondary" href="/nutrition.php">Clear</a>
+            <?php endif; ?>
+        </form>
+        <div class="library-stats" aria-label="Medicine result count">
+            <article><strong><?= count($medicines) ?></strong><span><?= $searchQuery === '' ? 'shown of ' . number_format($totalMedicines) . ' medicines' : 'medicine results' ?></span></article>
+        </div>
+    </section>
+
    <section class="detail-grid">
        <?php foreach ($medicines as $medicine): ?>
            <article>
                <h2><?= htmlspecialchars(ucfirst($medicine['generic_name']), ENT_QUOTES) ?></h2>
                <p><strong><?= htmlspecialchars($medicine['class_name'], ENT_QUOTES) ?></strong></p>
+                <p><strong>Active ingredient:</strong> <?= htmlspecialchars($medicine['active_ingredient'] ?: $medicine['generic_name'], ENT_QUOTES) ?></p>
+                <p><strong>Chemical name:</strong> <?= htmlspecialchars($medicine['chemical_name'] ?: $medicine['active_ingredient'] ?: $medicine['generic_name'], ENT_QUOTES) ?></p>
+                <p><strong>Common brands:</strong> <?= htmlspecialchars($medicine['brand_names'] ?: 'Brand names vary by market', ENT_QUOTES) ?></p>
+                <p><strong>Generic/alternate names:</strong> <?= htmlspecialchars($medicine['generic_brands'] ?: $medicine['generic_name'], ENT_QUOTES) ?></p>
                <p><?= htmlspecialchars($medicine['common_use'], ENT_QUOTES) ?></p>
                <p><?= htmlspecialchars($medicine['tracking_note'], ENT_QUOTES) ?></p>
                <div class="source-links">
                    <a href="<?= htmlspecialchars($medicine['rxnorm_url'], ENT_QUOTES) ?>">RxNorm</a>
+                    <a href="<?= htmlspecialchars($medicine['pubchem_url'], ENT_QUOTES) ?>">PubChem</a>
+                    <a href="<?= htmlspecialchars($medicine['dailymed_url'], ENT_QUOTES) ?>">DailyMed</a>
                    <a href="<?= htmlspecialchars($medicine['medlineplus_url'], ENT_QUOTES) ?>">MedlinePlus</a>
                    <a href="<?= htmlspecialchars($medicine['pubmed_url'], ENT_QUOTES) ?>">PubMed</a>
                    <a href="<?= htmlspecialchars($medicine['clinicaltrials_url'], ENT_QUOTES) ?>">Studies</a>